If you want to upload file directly by using your cpanel you don't need to use 3rd party software, you can use the cPanel's inbuilt File Manager.

1. Log into your cPanel account.
2. In the "Files" section, click on the "FileManger" Icon.   
3.  cPanel File Manager will be open. 
4.  Navigate to the directory where you want to upload your files to. For example, should you wish to upload your file to the public html folder, you need to go to /public_html first. On the left side you can see a list of directories. Double Click on the "public_html" folder.   
5. Now click on the "Upload" icon. 
6. Click on the "Select File" button and select the file you want to upload from your PC. After you have select the file, the upload process will begin automatically.